Software tools available on the cluster
- Version: version number of software
- Path: path of the software
- Variables: Relevant shell variables that are pre-set or need to be set
- Documentation: Location of documentation
- Function: Description of the software's purpose/function
- Version: 3.4.5
- Path: Standard system paths
- Set automatically: PVM_ROOT=/usr/share/pvm3
- Set automatically: PVM_ARCH=`$PVM_ROOT/lib/pvmgetarch`
- Set automatically: PVM_RSH=/usr/bin/ssh
- Documentation: /usr/share/doc/pvm-3.4.5
- Description: PVM3 (Parallel Virtual Machine) is a library and daemon that allows distributed processing environments to be constructed on heterogeneous machines and architectures.
- Version: 1.4
- Path: /usr/lib64/mvapich2/
- Variables: User set: Run "mpi-selector --set mvapich2-1.4-gcc-x86_64" in order to set 64-bit mvapich2 as the default MPI environment.
- Description: This is an MPI-2 implementation which includes all MPI-1 features. It is based on MPICH2 and MVICH.
- Version: 1.4
- Path: /usr/lib64/openmpi/
- Variables: User set: Run "mpi-selector --set openmpi-1.4-gcc-x86_64" in order to set 64-bit OpenMPI as the default MPI environment.
- Description: Open MPI is an open source, freely available implementation of both the MPI-1 and MPI-2 standards, combining technologies and resources from several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best MPI library available. A completely new MPI-2 compliant implementation, Open MPI offers advantages for system and software vendors, application developers, and computer science researchers.
At the least, the PATH will need to be set, the other variables that may need to be set will
be dependent on the software using them (JAVA_HOME is a common one).
User set: PATH=/usr/java/default/bin:$PATH
- This is the Sun Java Software Development Kit for 1.6
- Automatically set: R_LIBS=/cluster/statsoft/Rlibs64
Automatically set: PATH="$PATH:/cluster/statsoft/bin"
- R is a free software environment for statistical computing and graphics.
- None that I am aware of
- Please see http://www.doornik.com/ox/index.html for documentation
- Ox is an object-oriented matrix programming language with a comprehensive mathematical and statistical function library.The Console (command line) versions may be used freely for academic research and teaching purposes only...Failure to cite the use of Ox in published work may result in loss of the right to use the free version, and an invoice at the full commercial price. Please see http://www.doornik.com/ox/index.html?content=/ox/oxcite.html for further requirements.